tools
Open research software, models, and web resources.
A selection of open tools, pretrained models, and web resources from my work in protein and RNA bioinformatics.
ProtFlash
A lightweight protein language model with linear-complexity attention for efficient protein representation learning.
NeuroPred-PLM
An interpretable protein-language-model approach for neuropeptide prediction.
DeepNeuropePred
A robust predictor of neuropeptide precursor cleavage sites that combines protein language models with convolutional networks.
LocPred-Prok
A dual-branch, protein-language-model method for prokaryotic protein subcellular localization prediction.
MetaFold-RNA
A meta-learning-guided deep network for accurate RNA secondary-structure prediction.
SSAlign
An efficient and sensitive protein-structure retrieval method that combines sequence and structural representations.